AmplifX 1.37

AmplifX 1.37 Screenshot The main purpose of AmplifX is to seek in a collection of primers, such as any molecular biologist get in his refrigerators, those which can be use to amplify a fragment into a target sequence, for example, and particularly, to design strategies to screen recombinant clones by PCR.

Developer:   Nicolas Jullien
      software by Nicolas Jullien →
Price:  0.00
License:   Freeware
File size:   0K
Language:   
OS:   Windows Vista (?)
Rating:   0 /5 (0 votes)

The main purpose of AmplifX is to seek in a collection of primers, such as any molecular biologist get in his refrigerators, those which can be use to amplify a fragment into a target sequence, for example, and particularly, to design strategies to screen recombinant clones by PCR.

AmplifX is atool that seek is a prime collection and also design new primes.

Some informations are associated with each primer, some automaticelly computed by AmplifX (like TM, Quality, length) and others given by the user (name, comments,...) This allows general aspects of primer management (sequences and real tubes). AmplifX can also design new primers.

AmplifX features
  • New icons.
  • Improvement of clipboard linked menus and « Undo » menu.
  • Improvement of appearance and behavior of the drawer window giving more information about primers. This window is now only shown and masked with a single button located in the upper right corner of the primer list box. The drawer appears only in the right of the main window and if needed the main window resizes or moves itself.
  • Improvement of menu activations.
  • Add (partial) Contextual menus management.
  • Add new help tags and new menu to activate/deactivate « contextual help »
  • Change the mouse position indicator onto the sequence map. It’s more esthetic and more functional. (And fix zoomed map positions)
  • Mac OS X : Dot close button management linked to the primer list modifications
  • Preference window is now viewed as modal window and can be displayed from the Design primer window.
  • Add the possibility to visualize more than 10 best scoring primer pairs in the design window. (1 to 1000). (The new algorithm is a little bit less efficient for sorting the 10 best pairs but much more efficient to sort the 1000 best pairs.)
  • Improvement of the application quitting process while the design primer window is visible.
  • New calculation for the suggested annealing temperature after Chavali,S. et al. in Bioinformatics 21 pp 3918-3925 (2005) (With Amplicon TM calculated with the NN method).

    tags the design  the main  design primer  primer window  best pairs  window and  primer list  also design  design new  the drawer  the primer  main window  

    AmplifX 1.37 screenshot


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